RESEARCH OVERVIEW

Mechanistic understanding of the role(s) of conserved catalytic residues and physiological condition(s) on Mycobacterium tuberculosis (Mtu) SufB intein splicing. This could lead to development of novel anti-tubercular drugs by regulating splicing and generation of active SufB protein in pathogenic mycobacteria
To identify the role(s) of toxic metal(s) on Mtu SufB splicing and its use as a sensor for environmental toxic metals
Intein splicing towards drug therapy
Inteins are intervening polypeptides that interrupt the functional domains of several important proteins across the three domains of life. Inteins excise themselves from the precursor protein, ligating concomitant extein residues in a process called protein splicing. Post-translational auto-removal of inteins remain critical for the generation of active proteins. The perspective of inteins in science is a robust field of research, however fundamental studies centralized upon splicing regulatory mechanisms are imperative for addressing more intricate issues. Mycobacterium tuberculosis (Mtu) carries an intein-bearing SufB protein, which is essential for Fe-S cluster biogenesis, especially during periods of stress, that ultimately determines virulence inside the host. Thus, SufB is a central and unique component of the mycobacterial SUF system and intein splicing is crucial for the functionality of SufB protein. We found that SufB protein is well conserved in mycobacteria, bacteria, and archaea during the evolutionary course. Intein insertion points may vary in some species, but the conservation of critical residues in SufB intein and extein regions do exist. Our current work focuses primarily on identifying the role(s) of conserved catalytic residues and environmental condition(s) on Mtu SufB intein splicing. This mechanism could provide a novel approach to develop anti-tubercular drugs through the regulation of splicing and the generation of an essential protein in pathogenic mycobacteria.

Fabrication and evaluation of the antimicrobial efficiency of Graphene oxide (GO)-coated metal substrates.
Designing and testing of the antimicrobial efficacy of polymer-coated substrates.
Future nanomaterials as next-generation nanostructures.
Nanomaterials such as silver nanoparticles and graphene-based composites are known to exhibit biocidal activities. However, interaction with the surrounding medium and supporting substrates can significantly influence this activity. Graphene, a carbon allotrope has unique structural and physicochemical properties, leading to the major focus of our research. Graphene and its derivates like Graphene oxide (GO) and reduced Graphene Oxide (rGO) are biocompatible in nature. Hence, their application in the biomedical sector is currently an intense area of research. Nayak group currently focuses on the antimicrobial properties and the mechanism of such antimicrobial activities of GO coatings on different metallic films. In one of the recent works, the observed activity is directly correlated to the electrical conductivity of the GO-metal systems; the higher the conductivity the better is the antibacterial activity. GO-metal substrate interactions serve as an efficient electron sink for the bacterial respiratory pathway, where electrons modify oxygen-containing functional groups on GO surfaces to generate reactive oxygen species (ROS). A concerted effect of non-oxidative electron transfer mechanism and consequent ROS mediated oxidative stress to the bacteria result in an enhanced antimicrobial action of naturally derived GO-metal films. This results can lead to new GO coated antimicrobial metal surfaces important for environmental and biomedical applications. A recently funded project involves examining the antimicrobial properties of different polymer coated substrates.
Mtu SufB intein splicing
Nanomaterials as next generation antimicrobial composites/surfaces
PROJECT LIST
On-going International and Industrial Projects-
1. Splicing inhibition of Mtu SufB protein: a broad-spectrum therapeutic approach to manage multi-drug resistance tuberculosis, Funded by the Indian Council of Medical Research (2024-2027)
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2. Use of probiotics to manage drug-resistant infections-A broad spectrum therapeutic approach, Funded by DD Innovation Inc., USA (2023-2025)
3. Development of innovative and robust process of antimicrobial coating on Aluminium substrates, Funded by NALCO Ltd., India (2021-2023)
4. Food grade and antifungal testing of coated materials, Funded by Tata Steel Limited, Jamshedpur (2022-2023)
Finished Projects-
1. Indo-US Joint Center on Nanostructure Genomics: Designing Functionality of 2-Dimensional Nanostructures and Nano-Bio Interfaces, Funded by Indo-US Science and Technology Forum (IUSSTF) (2014-2017)
2. Testing antibacterial activities of graphene on various surfaces (steel, iron, nickel, zinc), Funded by Tata Steel Limited, Jamshedpur (2014-2017)
3. Testing and understanding of antimicrobial activity of graphene oxide containing composite substrates, Tata Steel Limited, Jamshedpur (2019-2021)
4. Elemental Mapping and its use in regulation of mycobacterial SufB splicing by metals and its possible use as metal sensor. UGC-DAE CSR (2015-2018, extended 2019-2022)